plotting

This module implements plotting functions for the oddSNP package, including functions to visualize the results of SNP-IC and cpSNP-IC calculations.

Python API

oddSNP.plotting.generate_cpsnpic_plot(histofile)

Generate a cpSNP-IC histogram figure

Parameters:

histofile – File that contains histogram data, a list of bin centers and counts.

Returns:

The generated figure object.

Return type:

plotly.graph_objects.Figure

oddSNP.plotting.generate_donor_distribution_plot(barsfile)

Generate a stacked bar plot showing the distribution of correct and incorrect classifications across donors.

Parameters:

barsfile – File that contains the data for the plot, a DataFrame with columns ‘donor’ and ‘correct’.

Returns:

The generated figure object.

Return type:

plotly.graph_objects.Figure

oddSNP.plotting.generate_snpic_plot(histofile)

Generate a SNP-IC histogram figure and return the generated figure object.

Parameters:

histofile – File that contains histogram data, a list of bin centers and counts.

Returns:

The generated figure object.

Return type:

plotly.graph_objects.Figure

oddSNP.plotting.save_plot(figure, output, force=False)

Save a SNP-IC or cpSNP-IC histogram figure

Parameters:

• figure – The figure object to save (with extension .html)

• output – The output file where to save the figure

• force – If True ovewrites existing files